IL_9PN5_077

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9PN5|1|A1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9PN5|1|A1|C|1918
9PN5|1|A1|G|1919
9PN5|1|A1|U|1920
9PN5|1|A1|A|1921
9PN5|1|A1|A|1922
9PN5|1|A1|C|1923
*
9PN5|1|A1|G|1928
9PN5|1|A1|G|1929
9PN5|1|A1|A|1930
9PN5|1|A1|U|1931
9PN5|1|A1|A|1932
9PN5|1|A1|A|1933
9PN5|1|A1|G|1934

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain An

Small ribosomal subunit protein eS32A

Chain Ap

60S ribosomal protein L43-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA