IL_9PN5_084

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.3

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9PN5|1|A1|C|2204
9PN5|1|A1|U|2205
9PN5|1|A1|G|2206
9PN5|1|A1|A|2207
9PN5|1|A1|A|2208
9PN5|1|A1|U|2209
9PN5|1|A1|G|2210
*
9PN5|1|A1|C|2235
9PN5|1|A1|G|2236
9PN5|1|A1|C|2237
9PN5|1|A1|G|2238

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA