Motif IL_89862.3 Version IL_89862.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-5 | 3-9 | 4-10 | 5-10 | 6-9 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_138 | 9H3G | 0.8459 | 0 | A | LSU rRNA | C | 3213 | U | 3214 | A | 3215 | A | 3216 | G | 3217 | U | 3218 | C | 3219 | * | G | 3244 | C | 3245 | C | 3246 | G | 3247 | cWW | ncWW | ncWW | cWW | ||||
| 2 | IL_9PN5_084 | 9PN5 | 0.7060 | 0 | A1 | LSU rRNA | C | 2204 | U | 2205 | G | 2206 | A | 2207 | A | 2208 | U | 2209 | G | 2210 | * | C | 2235 | G | 2236 | C | 2237 | G | 2238 | cWW | ncWW | ncWB | cWW | ||||
| 3 | IL_8GLP_302 | 8GLP | 0.2912 | 0 | L5 | LSU rRNA | A | 2832 | A | 2833 | C | 2834 | A | 2835 | A | 2836 | OMU | 2837 | G | 2838 | * | C | 3850 | PSU | 3851 | A | 3852 | PSU | 3853 | cWW | tHS | cWW | |||||
| 4 | IL_9AXU_070 | 9AXU | 0.0628 | 0 | 2 | LSU rRNA | A | 1938 | A | 1939 | C | 1940 | A | 1941 | A | 1942 | U | 1943 | G | 1944 | * | C | 2434 | U | 2435 | A | 2436 | U | 2437 | cWW | tHS | cWW | |||||
| 5 | IL_9H3G_083 | 9H3G | 0.0000 | 0 | A | LSU rRNA | A | 1885 | A | 1886 | C | 1887 | A | 1888 | A | 1889 | OMU | 1890 | G | 1891 | * | C | 2344 | OMU | 2345 | A | 2346 | U | 2347 | cWW | tHS | cWW | |||||
| 6 | IL_9PN5_072 | 9PN5 | 0.0585 | 0 | A1 | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | PSU | 2349 | cWW | tHS | cWW | |||||
| 7 | IL_8OI5_076 | 8OI5 | 0.0871 | 0 | 1 | LSU rRNA | A | 1879 | A | 1880 | U | 1881 | A | 1882 | A | 1883 | U | 1884 | G | 1885 | * | C | 2324 | U | 2325 | A | 2326 | U | 2327 | cWW | tHS | cWW | |||||
| 8 | IL_4LFB_048 | 4LFB | 0.6251 | 1 | A | SSU rRNA | G | 1143 | G | 1144 | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1126 | G | 1127 | C | 1128 | cWW | ncSH | ncWW | ntHS | ncWS | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAGUC*GCCG | 1 |
| CUGAAUG*CGCG | 1 |
| AACAA(OMU)G*C(PSU)A(PSU) | 1 |
| AACAAUG*CUAU | 1 |
| AACAA(OMU)G*C(OMU)AU | 1 |
| AAUAAUG*CUA(PSU) | 1 |
| AAUAAUG*CUAU | 1 |
| GGCACUC*GUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 2 |
| UAAGU*CC | 1 |
| UGAAU*GC | 1 |
| ACAA(OMU)*(PSU)A | 1 |
| ACAAU*UA | 1 |
| ACAA(OMU)*(OMU)A | 1 |
| GCACU*UUG | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Heat map statistics
- Min 0.06 | Avg 0.48 | Max 0.95
Coloring options: