IL_9PN5_112
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62879.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PN5|1|A1|C|3018
9PN5|1|A1|U|3019
9PN5|1|A1|U|3020
9PN5|1|A1|A|3021
9PN5|1|A1|G|3022
9PN5|1|A1|U|3023
9PN5|1|A1|A|3024
9PN5|1|A1|C|3025
*
9PN5|1|A1|G|3030
9PN5|1|A1|G|3031
9PN5|1|A1|A|3032
9PN5|1|A1|A|3033
9PN5|1|A1|C|3034
9PN5|1|A1|A|3035
9PN5|1|A1|G|3036
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AH
- Large ribosomal subunit protein uL6A
- Chain AV
- 60S ribosomal protein L23-A
- Chain Am
- Ubiquitin-ribosomal protein eL40A fusion protein
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