IL_9PN5_134

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAAAGCA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.2

Basepair signature

cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9PN5|1|A3|G|21
9PN5|1|A3|A|22
9PN5|1|A3|A|23
9PN5|1|A3|A|24
9PN5|1|A3|G|25
9PN5|1|A3|C|26
9PN5|1|A3|A|27
*
9PN5|1|A3|U|53
9PN5|1|A3|U|54
9PN5|1|A3|A|55
9PN5|1|A3|A|56
9PN5|1|A3|G|57
9PN5|1|A3|C|58

Current chains

Chain A3

5S rRNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AJ

60S ribosomal protein L11-A