IL_9PN5_154

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

9PN5|1|B5|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9PN5|1|B5|G|204
9PN5|1|B5|U|205
9PN5|1|B5|A|206
*
9PN5|1|B5|U|259
9PN5|1|B5|U|260
9PN5|1|B5|U|261
9PN5|1|B5|U|262
9PN5|1|B5|C|263

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BI

Small ribosomal subunit protein eS8A