IL_9PN5_167

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

9PN5|1|B5|A|483, 9PN5|1|B5|A|505, 9PN5|1|B5|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13910.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9PN5|1|B5|G|480
9PN5|1|B5|A|481
9PN5|1|B5|U|482
9PN5|1|B5|A|483
9PN5|1|B5|C|484
*
9PN5|1|B5|G|503
9PN5|1|B5|U|504
9PN5|1|B5|A|505
9PN5|1|B5|A|506
9PN5|1|B5|U|507
9PN5|1|B5|U|508

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

Small ribosomal subunit protein uS4A

Chain Be

Small ribosomal subunit protein eS30A