IL_9PN5_171

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9PN5|1|B5|A|550
9PN5|1|B5|G|551
9PN5|1|B5|G|552
9PN5|1|B5|G|553
9PN5|1|B5|C|554
9PN5|1|B5|A|555
9PN5|1|B5|A|556
9PN5|1|B5|G|557
*
9PN5|1|B5|C|587
9PN5|1|B5|U|588

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

Small ribosomal subunit protein uS5

Chain BJ

Small ribosomal subunit protein uS4A

Chain Be

Small ribosomal subunit protein eS30A