IL_9PN5_200

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GGUC*GUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9PN5|1|B5|G|1212
9PN5|1|B5|G|1213
9PN5|1|B5|U|1214
9PN5|1|B5|C|1215
*
9PN5|1|B5|G|1448
9PN5|1|B5|U|1449
9PN5|1|B5|U|1450
9PN5|1|B5|C|1451

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

Small ribosomal subunit protein eS10A

Chain BP

Small ribosomal subunit protein uS19

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

Ubiquitin-ribosomal protein eS31 fusion protein