IL_9PN5_205

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGCAUG*UGAUG

Length

11 nucleotides

Bulged bases

9PN5|1|B5|C|1274, 9PN5|1|B5|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9PN5|1|B5|U|1272
9PN5|1|B5|G|1273
9PN5|1|B5|C|1274
9PN5|1|B5|A|1275
9PN5|1|B5|U|1276
9PN5|1|B5|G|1277
*
9PN5|1|B5|U|1434
9PN5|1|B5|G|1435
9PN5|1|B5|A|1436
9PN5|1|B5|U|1437
9PN5|1|B5|G|1438

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

Small ribosomal subunit protein uS3

Chain BK

Small ribosomal subunit protein eS10A

Chain BU

Small ribosomal subunit protein uS10

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

Ubiquitin-ribosomal protein eS31 fusion protein