IL_9PN5_216
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74283.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9PN5|1|B5|G|1480
9PN5|1|B5|C|1481
9PN5|1|B5|C|1482
9PN5|1|B5|A|1483
9PN5|1|B5|G|1484
9PN5|1|B5|C|1485
9PN5|1|B5|G|1486
9PN5|1|B5|A|1487
*
9PN5|1|B5|U|1519
9PN5|1|B5|U|1520
9PN5|1|B5|G|1521
9PN5|1|B5|U|1522
9PN5|1|B5|G|1523
9PN5|1|B5|A|1524
9PN5|1|B5|A|1525
9PN5|1|B5|A|1526
9PN5|1|B5|C|1527
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BF
- Small ribosomal subunit protein uS7
- Chain BQ
- Small ribosomal subunit protein uS9A
- Chain BT
- Small ribosomal subunit protein eS19A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
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