IL_9PN5_217
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 9PN5|1|B5|U|1491, 9PN5|1|B5|A|1516, 9PN5|1|B5|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12629.1
- Basepair signature
- cWW-tSS-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9PN5|1|B5|G|1488
9PN5|1|B5|U|1489
9PN5|1|B5|C|1490
9PN5|1|B5|U|1491
9PN5|1|B5|A|1492
9PN5|1|B5|A|1493
9PN5|1|B5|C|1494
*
9PN5|1|B5|G|1513
9PN5|1|B5|U|1514
9PN5|1|B5|A|1515
9PN5|1|B5|A|1516
9PN5|1|B5|U|1517
9PN5|1|B5|C|1518
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BT
- Small ribosomal subunit protein eS19A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
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