IL_9PN5_223

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9PN5|1|B5|A|1756||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9PN5|1|B5|C|1644
9PN5|1|B5|G|1645
9PN5|1|B5|C|1646
9PN5|1|B5|U|1647
*
9PN5|1|B5|A|1753
9PN5|1|B5|A|1754
9PN5|1|B5|A|1755
9PN5|1|B5|A|1756||A
9PN5|1|B5|G|1757

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

Small ribosomal subunit protein eS32A

Chain BX

Small ribosomal subunit protein uS12A

Chain Be

Small ribosomal subunit protein eS30A