IL_9PR4_010

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

AAG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PR4_010 not in the Motif Atlas

Geometric match to IL_3CUL_008

Geometric discrepancy: 0.2143

The information below is about IL_3CUL_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9PR4|1|A|A|1925
9PR4|1|A|A|1926
9PR4|1|A|G|1927
*
9PR4|1|A|U|1977
9PR4|1|A|A|1978
9PR4|1|A|U|1979

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial