IL_9PR4_058

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PR4_058 not in the Motif Atlas

Geometric match to IL_8P9A_344

Geometric discrepancy: 0.1572

The information below is about IL_8P9A_344

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9PR4|1|A|C|3119
9PR4|1|A|C|3120
9PR4|1|A|C|3121
9PR4|1|A|U|3122
9PR4|1|A|G|3123
9PR4|1|A|U|3124
9PR4|1|A|A|3125
9PR4|1|A|C|3126
*
9PR4|1|A|G|3131
9PR4|1|A|G|3132
9PR4|1|A|A|3133
9PR4|1|A|C|3134
9PR4|1|A|A|3135
9PR4|1|A|A|3136
9PR4|1|A|G|3137

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial