IL_9PR4_060
3D structure
- PDB id
- 9PR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- CA*UUUG
- Length
- 6 nucleotides
- Bulged bases
- 9PR4|1|A|U|3228, 9PR4|1|A|U|3229
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PR4_060 not in the Motif Atlas
- Geometric match to IL_8SP9_001
- Geometric discrepancy: 0.167
- The information below is about IL_8SP9_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9PR4|1|A|C|3212
9PR4|1|A|A|3213
*
9PR4|1|A|U|3227
9PR4|1|A|U|3228
9PR4|1|A|U|3229
9PR4|1|A|G|3230
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain 7
- 39S ribosomal protein L39, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain O
- 39S ribosomal protein L17, mitochondrial
Coloring options: