IL_9PRD_013
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GAG*CUACC
- Length
- 8 nucleotides
- Bulged bases
- 9PRD|1|A|A|1986, 9PRD|1|A|U|1998, 9PRD|1|A|A|1999, 9PRD|1|A|C|2000
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PRD_013 not in the Motif Atlas
- Geometric match to IL_9E6Q_032
- Geometric discrepancy: 0.0767
- The information below is about IL_9E6Q_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9PRD|1|A|G|1985
9PRD|1|A|A|1986
9PRD|1|A|G|1987
*
9PRD|1|A|C|1997
9PRD|1|A|U|1998
9PRD|1|A|A|1999
9PRD|1|A|C|2000
9PRD|1|A|C|2001
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain n
- Nascent polypeptide
Coloring options: