IL_9PRD_032

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9PRD|1|A|A|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRD_032 not in the Motif Atlas

Homologous match to IL_7A0S_064

Geometric discrepancy: 0.1886

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9PRD|1|A|C|2490
9PRD|1|A|C|2491
*
9PRD|1|A|G|2643
9PRD|1|A|A|2644
9PRD|1|A|G|2645

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein