IL_9PRD_076
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GUGCCAG*CGGUCACAC
- Length
- 16 nucleotides
- Bulged bases
- 9PRD|1|AA|C|904, 9PRD|1|AA|C|906, 9PRD|1|AA|A|907
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PRD_076 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.2666
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PRD|1|AA|G|887
9PRD|1|AA|U|888
9PRD|1|AA|G|889
9PRD|1|AA|C|890
9PRD|1|AA|C|891
9PRD|1|AA|A|892
9PRD|1|AA|G|893
*
9PRD|1|AA|C|900
9PRD|1|AA|G|901
9PRD|1|AA|G|902
9PRD|1|AA|U|903
9PRD|1|AA|C|904
9PRD|1|AA|A|905
9PRD|1|AA|C|906
9PRD|1|AA|A|907
9PRD|1|AA|C|908
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AZ
- 28S ribosomal protein S33, mitochondrial
- Chain Az
- mRNA
Coloring options: