IL_9PRD_085

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRD_085 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.2046

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9PRD|1|AA|A|1067
9PRD|1|AA|A|1068
9PRD|1|AA|A|1069
9PRD|1|AA|C|1070
9PRD|1|AA|U|1071
*
9PRD|1|AA|A|1087
9PRD|1|AA|C|1088
9PRD|1|AA|U|1089
9PRD|1|AA|A|1090
9PRD|1|AA|U|1091

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

Small ribosomal subunit protein bS21m