IL_9PRQ_036

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

9PRQ|1|A|U|2628, 9PRQ|1|A|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRQ_036 not in the Motif Atlas

Geometric match to IL_8ZAU_001

Geometric discrepancy: 0.1471

The information below is about IL_8ZAU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9PRQ|1|A|G|2596
9PRQ|1|A|C|2597
*
9PRQ|1|A|G|2627
9PRQ|1|A|U|2628
9PRQ|1|A|A|2629
9PRQ|1|A|U|2630

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain Ax

P/P-tRNA