IL_9PRQ_040

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

9PRQ|1|A|U|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRQ_040 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.1243

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

9PRQ|1|A|A|2730
9PRQ|1|A|U|2731
9PRQ|1|A|G|2732
*
9PRQ|1|A|C|2929
9PRQ|1|A|U|2930

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial