IL_9PRQ_112

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUG*UCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRQ_112 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2891

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9PRQ|1|Ah|G|10
9PRQ|1|Ah|U|11
9PRQ|1|Ah|G|12
*
9PRQ|1|Ah|U|23
9PRQ|1|Ah|C|24
9PRQ|1|Ah|A|25
9PRQ|1|Ah|C|26

Current chains

Chain Ah

A/T-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

28S ribosomal protein S12, mitochondrial