IL_9PRX_007
3D structure
- PDB id
- 9PRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9PRX|1|A|G|2011, 9PRX|1|A|G|2015
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PRX_007 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1686
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9PRX|1|A|G|1906
9PRX|1|A|A|1907
9PRX|1|A|A|1908
9PRX|1|A|A|1909
9PRX|1|A|C|1910
*
9PRX|1|A|G|2009
9PRX|1|A|U|2010
9PRX|1|A|G|2011
9PRX|1|A|A|2012
9PRX|1|A|U|2013
9PRX|1|A|A|2014
9PRX|1|A|G|2015
9PRX|1|A|C|2016
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: