IL_9PRX_017

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_017 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.2315

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9PRX|1|A|U|2168
9PRX|1|A|A|2169
9PRX|1|A|G|2170
*
9PRX|1|A|C|2190
9PRX|1|A|A|2191
9PRX|1|A|A|2192

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial