IL_9PRX_052

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

9PRX|1|A|G|3063, 9PRX|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_052 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1504

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

9PRX|1|A|A|2997
9PRX|1|A|U|2998
9PRX|1|A|C|2999
*
9PRX|1|A|G|3061
9PRX|1|A|U|3062
9PRX|1|A|G|3063
9PRX|1|A|A|3064
9PRX|1|A|U|3065

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial