IL_9PRX_064

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_064 not in the Motif Atlas

Homologous match to IL_6CZR_116

Geometric discrepancy: 0.3027

The information below is about IL_6CZR_116

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9PRX|1|AA|C|694
9PRX|1|AA|A|695
9PRX|1|AA|U|696
*
9PRX|1|AA|A|819
9PRX|1|AA|G|820

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AU

28S ribosomal protein S26, mitochondrial