IL_9PRX_083

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_083 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.3107

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9PRX|1|AA|G|1062
9PRX|1|AA|A|1063
9PRX|1|AA|C|1064
9PRX|1|AA|C|1065
9PRX|1|AA|C|1066
*
9PRX|1|AA|G|1092
9PRX|1|AA|C|1093

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial