IL_9PRX_084

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_084 not in the Motif Atlas

Geometric match to IL_4WF9_052

Geometric discrepancy: 0.2891

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9PRX|1|AA|A|1067
9PRX|1|AA|A|1068
9PRX|1|AA|A|1069
9PRX|1|AA|C|1070
9PRX|1|AA|U|1071
*
9PRX|1|AA|A|1087
9PRX|1|AA|C|1088
9PRX|1|AA|U|1089
9PRX|1|AA|A|1090
9PRX|1|AA|U|1091

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

Small ribosomal subunit protein bS21m