IL_9PRX_097

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAAA*UAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_097 not in the Motif Atlas

Geometric match to IL_8CRE_402

Geometric discrepancy: 0.1733

The information below is about IL_8CRE_402

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9PRX|1|AA|C|1274
9PRX|1|AA|A|1275
9PRX|1|AA|A|1276
9PRX|1|AA|A|1277
*
9PRX|1|AA|U|1298
9PRX|1|AA|A|1299
9PRX|1|AA|A|1300
9PRX|1|AA|G|1301

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A1

28S ribosomal protein S35, mitochondrial

Chain AB

28S ribosomal protein S2, mitochondrial

Chain AC

28S ribosomal protein S24, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial