IL_9PRX_105

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_105 not in the Motif Atlas

Geometric match to IL_8CRE_475

Geometric discrepancy: 0.1238

The information below is about IL_8CRE_475

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9PRX|1|AA|A|1507
9PRX|1|AA|C|1508
9PRX|1|AA|U|1509
9PRX|1|AA|U|1510
*
9PRX|1|AA|A|1540
9PRX|1|AA|U|1541
9PRX|1|AA|U|1542
9PRX|1|AA|U|1543

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain A3

Aurora kinase A-interacting protein

Chain L

39S ribosomal protein L14, mitochondrial