IL_9PS0_056

3D structure

PDB id

9PS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PS0_056 not in the Motif Atlas

Geometric match to IL_9AXU_109

Geometric discrepancy: 0.1642

The information below is about IL_9AXU_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9PS0|1|A|C|3119
9PS0|1|A|C|3120
9PS0|1|A|C|3121
9PS0|1|A|U|3122
9PS0|1|A|G|3123
9PS0|1|A|U|3124
9PS0|1|A|A|3125
9PS0|1|A|C|3126
*
9PS0|1|A|G|3131
9PS0|1|A|G|3132
9PS0|1|A|A|3133
9PS0|1|A|C|3134
9PS0|1|A|A|3135
9PS0|1|A|A|3136
9PS0|1|A|G|3137

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial