IL_9PS7_050

3D structure

PDB id

9PS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PS7_050 not in the Motif Atlas

Geometric match to IL_8CRE_394

Geometric discrepancy: 0.2025

The information below is about IL_8CRE_394

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9PS7|1|A|U|2955
9PS7|1|A|A|2956
9PS7|1|A|G|2957
*
9PS7|1|A|C|2967
9PS7|1|A|A|2968

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial