IL_9PSI_029
3D structure
- PDB id
- 9PSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PSI_029 not in the Motif Atlas
- Geometric match to IL_8GLP_305
- Geometric discrepancy: 0.0788
- The information below is about IL_8GLP_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9PSI|1|A|G|2470
9PSI|1|A|G|2471
9PSI|1|A|A|2472
9PSI|1|A|A|2473
9PSI|1|A|C|2474
9PSI|1|A|U|2475
9PSI|1|A|C|2476
9PSI|1|A|G|2477
9PSI|1|A|G|2478
*
9PSI|1|A|C|2653
9PSI|1|A|U|2654
9PSI|1|A|G|2655
9PSI|1|A|U|2656
9PSI|1|A|C|2657
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain Q
- 39S ribosomal protein L19, mitochondrial
Coloring options: