IL_9PSI_064

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

9PSI|1|AA|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PSI_064 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.221

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9PSI|1|AA|U|690
9PSI|1|AA|A|691
9PSI|1|AA|C|692
*
9PSI|1|AA|G|822
9PSI|1|AA|A|823

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains