IL_9PSM_054

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

9PSM|1|A|A|3059, 9PSM|1|A|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PSM_054 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1736

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9PSM|1|A|C|2999
9PSM|1|A|A|3000
*
9PSM|1|A|U|3058
9PSM|1|A|A|3059
9PSM|1|A|C|3060
9PSM|1|A|G|3061

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain K

Large ribosomal subunit protein uL13m