IL_9PSM_072

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUU*AA

Length

5 nucleotides

Bulged bases

9PSM|1|AA|U|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PSM_072 not in the Motif Atlas

Homologous match to IL_6CZR_126

Geometric discrepancy: 0.3104

The information below is about IL_6CZR_126

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9PSM|1|AA|U|830
9PSM|1|AA|U|831
9PSM|1|AA|U|832
*
9PSM|1|AA|A|855
9PSM|1|AA|A|856

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial