IL_9PSM_085
3D structure
- PDB id
- 9PSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A/P-P/E state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AAACU*ACUAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PSM_085 not in the Motif Atlas
- Geometric match to IL_4WF9_052
- Geometric discrepancy: 0.2981
- The information below is about IL_4WF9_052
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9PSM|1|AA|A|1067
9PSM|1|AA|A|1068
9PSM|1|AA|A|1069
9PSM|1|AA|C|1070
9PSM|1|AA|U|1071
*
9PSM|1|AA|A|1087
9PSM|1|AA|C|1088
9PSM|1|AA|U|1089
9PSM|1|AA|A|1090
9PSM|1|AA|U|1091
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- 28S ribosomal protein S11, mitochondrial
- Chain AQ
- Small ribosomal subunit protein bS21m
Coloring options: