IL_9PSM_097

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PSM_097 not in the Motif Atlas

Homologous match to IL_6CZR_157

Geometric discrepancy: 0.2348

The information below is about IL_6CZR_157

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_08069.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

9PSM|1|AA|A|1266
9PSM|1|AA|U|1267
9PSM|1|AA|C|1268
*
9PSM|1|AA|G|1323
9PSM|1|AA|U|1324
9PSM|1|AA|U|1325

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AC

28S ribosomal protein S24, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial