IL_9PZG_020

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.1177

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9PZG|1|A|U|409
9PZG|1|A|G|410
9PZG|1|A|A|411
9PZG|1|A|A|412
9PZG|1|A|G|413
9PZG|1|A|A|414
9PZG|1|A|A|415
9PZG|1|A|G|416
*
9PZG|1|A|U|427
9PZG|1|A|G|428
9PZG|1|A|U|429
9PZG|1|A|A|430
9PZG|1|A|A|431
9PZG|1|A|A|432
9PZG|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4