IL_9PZG_041

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9PZG|1|A|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_041 not in the Motif Atlas

Geometric match to IL_8B0X_040

Geometric discrepancy: 0.3325

The information below is about IL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9PZG|1|A|G|933
9PZG|1|A|C|934
9PZG|1|A|A|935
*
9PZG|1|A|U|1380
9PZG|1|A|U|1381
9PZG|1|A|C|1382
9PZG|1|A|C|1383
9PZG|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9