IL_9PZG_050

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9PZG|1|A|U|1126

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_050 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.3593

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9PZG|1|A|G|1124
9PZG|1|A|U|1125
9PZG|1|A|U|1126
9PZG|1|A|G|1127
9PZG|1|A|C|1128
*
9PZG|1|A|G|1144
9PZG|1|A|A|1145
9PZG|1|A|A|1146
9PZG|1|A|C|1147
9PZG|1|A|U|1148
9PZG|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10