IL_9PZG_055

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_055 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.284

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9PZG|1|A|C|1259
9PZG|1|A|G|1260
9PZG|1|A|A|1261
9PZG|1|A|C|1262
9PZG|1|A|C|1263
*
9PZG|1|A|G|1272
9PZG|1|A|C|1273
9PZG|1|A|A|1274
9PZG|1|A|A|1275
9PZG|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS10

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14