IL_9Q1Q_045
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|748, 9Q1Q|1|5|U|914, 9Q1Q|1|5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|G|745
9Q1Q|1|5|A|746
9Q1Q|1|5|A|747
9Q1Q|1|5|G|748
9Q1Q|1|5|G|749
9Q1Q|1|5|U|750
9Q1Q|1|5|G|751
9Q1Q|1|5|G|752
*
9Q1Q|1|5|U|911
9Q1Q|1|5|G|912
9Q1Q|1|5|U|913
9Q1Q|1|5|U|914
9Q1Q|1|5|A|915
9Q1Q|1|5|C|916
9Q1Q|1|5|A|917
9Q1Q|1|5|G|918
9Q1Q|1|5|C|919
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L14
- Chain S
- eL20
Coloring options: