IL_9Q1Q_096
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|2512, 9Q1Q|1|5|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_096 not in the Motif Atlas
- Homologous match to IL_9AXU_060
- Geometric discrepancy: 0.132
- The information below is about IL_9AXU_060
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.3
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9Q1Q|1|5|C|2446
9Q1Q|1|5|U|2447
9Q1Q|1|5|G|2448
9Q1Q|1|5|A|2449
9Q1Q|1|5|G|2450
*
9Q1Q|1|5|C|2509
9Q1Q|1|5|G|2510
9Q1Q|1|5|A|2511
9Q1Q|1|5|A|2512
9Q1Q|1|5|A|2513
9Q1Q|1|5|G|2514
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L8
- Chain g
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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