IL_9Q1Q_123
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_123 not in the Motif Atlas
- Homologous match to IL_9H3G_097
- Geometric discrepancy: 0.1434
- The information below is about IL_9H3G_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.4
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|5|U|3715
9Q1Q|1|5|C|3716
9Q1Q|1|5|A|3717
9Q1Q|1|5|A|3718
9Q1Q|1|5|A|3719
9Q1Q|1|5|G|3720
9Q1Q|1|5|U|3721
*
9Q1Q|1|5|A|3732
9Q1Q|1|5|A|3733
9Q1Q|1|5|U|3734
9Q1Q|1|5|G|3735
9Q1Q|1|5|A|3736
9Q1Q|1|5|A|3737
9Q1Q|1|5|G|3738
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain i
- 60S ribosomal protein L36
Coloring options: