IL_9Q1Q_136

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGAGC*GGCUCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|G|4095
9Q1Q|1|5|C|4096
9Q1Q|1|5|G|4097
9Q1Q|1|5|A|4098
9Q1Q|1|5|G|4099
9Q1Q|1|5|C|4100
*
9Q1Q|1|5|G|4108
9Q1Q|1|5|G|4109
9Q1Q|1|5|C|4110
9Q1Q|1|5|U|4111
9Q1Q|1|5|C|4112
9Q1Q|1|5|U|4113

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain BB

40S ribosomal protein S3a

Chain G

Large ribosomal subunit protein eL8

Chain g

60S ribosomal protein L34