IL_9Q1Q_159
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGUAUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9Q1Q|1|5|U|4634, 9Q1Q|1|5|U|4636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_159 not in the Motif Atlas
- Homologous match to IL_8GLP_318
- Geometric discrepancy: 0.1862
- The information below is about IL_8GLP_318
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43276.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q1Q|1|5|U|4632
9Q1Q|1|5|G|4633
9Q1Q|1|5|U|4634
9Q1Q|1|5|A|4635
9Q1Q|1|5|U|4636
9Q1Q|1|5|G|4637
*
9Q1Q|1|5|C|4662
9Q1Q|1|5|G|4663
9Q1Q|1|5|A|4664
9Q1Q|1|5|A|4665
9Q1Q|1|5|G|4666
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain W
- uL24
- Chain d
- 60S ribosomal protein L31
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