IL_9Q1Q_159

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

9Q1Q|1|5|U|4634, 9Q1Q|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|U|4632
9Q1Q|1|5|G|4633
9Q1Q|1|5|U|4634
9Q1Q|1|5|A|4635
9Q1Q|1|5|U|4636
9Q1Q|1|5|G|4637
*
9Q1Q|1|5|C|4662
9Q1Q|1|5|G|4663
9Q1Q|1|5|A|4664
9Q1Q|1|5|A|4665
9Q1Q|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

uL24

Chain d

60S ribosomal protein L31