IL_9Q1Q_169
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUCG*CCUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_169 not in the Motif Atlas
- Homologous match to IL_9AXU_117
- Geometric discrepancy: 0.1468
- The information below is about IL_9AXU_117
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
9Q1Q|1|5|U|4972
9Q1Q|1|5|U|4973
9Q1Q|1|5|C|4974
9Q1Q|1|5|G|4975
*
9Q1Q|1|5|C|4983
9Q1Q|1|5|C|4984
9Q1Q|1|5|U|4985
9Q1Q|1|5|G|4986
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L31
Coloring options: