IL_9Q1Q_187

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9Q1Q|1|9|A|45, 9Q1Q|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_187 not in the Motif Atlas

Geometric match to IL_9H3G_158

Geometric discrepancy: 0.1572

The information below is about IL_9H3G_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.5

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9Q1Q|1|9|G|41
9Q1Q|1|9|A|42
9Q1Q|1|9|U|43
9Q1Q|1|9|U|44
9Q1Q|1|9|A|45
9Q1Q|1|9|A|46
9Q1Q|1|9|G|47
*
9Q1Q|1|9|C|479
9Q1Q|1|9|G|480
9Q1Q|1|9|C|481

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain XX

40S ribosomal protein S23